care.facility.models.patient_sample module¶

class PatientSample(id, external_id, created_date, modified_date, deleted, patient, consultation, sample_type, sample_type_other, has_sari, has_ari, doctor_name, diagnosis, diff_diagnosis, etiology_identified, is_atypical_presentation, atypical_presentation, is_unusual_course, icmr_category, icmr_label, status, result, fast_track, date_of_sample, date_of_result, testing_facility, created_by, last_edited_by)¶

Bases: FacilityBaseModel

SAMPLE_TEST_RESULT_MAP = {'AWAITING': 3, 'INVALID': 4, 'NEGATIVE': 2, 'POSITIVE': 1}¶

SAMPLE_TEST_RESULT_CHOICES = [(1, 'POSITIVE'), (2, 'NEGATIVE'), (3, 'AWAITING'), (4, 'INVALID')]¶

REVERSE_SAMPLE_TEST_RESULT_CHOICES = {1: 'POSITIVE', 2: 'NEGATIVE', 3: 'AWAITING', 4: 'INVALID'}¶

PATIENT_ICMR_CATEGORY = [(0, 'Cat 0'), (10, 'Cat 1'), (20, 'Cat 2'), (30, 'Cat 3'), (40, 'Cat 4'), (50, 'Cat 5a'), (60, 'Cat 5b')]¶

SAMPLE_TEST_FLOW_MAP = {'APPROVED': 2, 'COMPLETED': 7, 'DENIED': 3, 'RECEIVED_AND_FORWARED': 5, 'RECEIVED_AT_LAB': 6, 'REQUEST_SUBMITTED': 1, 'SENT_TO_COLLECTON_CENTRE': 4}¶

SAMPLE_TEST_FLOW_CHOICES = [(1, 'REQUEST_SUBMITTED'), (2, 'APPROVED'), (3, 'DENIED'), (4, 'SENT_TO_COLLECTON_CENTRE'), (5, 'RECEIVED_AND_FORWARED'), (6, 'RECEIVED_AT_LAB'), (7, 'COMPLETED')]¶

REVERSE_SAMPLE_TEST_FLOW_CHOICES = {1: 'REQUEST_SUBMITTED', 2: 'APPROVED', 3: 'DENIED', 4: 'SENT_TO_COLLECTON_CENTRE', 5: 'RECEIVED_AND_FORWARED', 6: 'RECEIVED_AT_LAB', 7: 'COMPLETED'}¶

SAMPLE_FLOW_RULES = {'APPROVED': {'COMPLETED', 'RECEIVED_AND_FORWARED', 'RECEIVED_AT_LAB', 'SENT_TO_COLLECTON_CENTRE'}, 'COMPLETED': {'COMPLETED'}, 'DENIED': {'REQUEST_SUBMITTED'}, 'RECEIVED_AND_FORWARED': {'COMPLETED', 'RECEIVED_AT_LAB'}, 'RECEIVED_AT_LAB': {'COMPLETED'}, 'REQUEST_SUBMITTED': {'APPROVED', 'DENIED'}, 'SENT_TO_COLLECTON_CENTRE': {'COMPLETED', 'RECEIVED_AND_FORWARED', 'RECEIVED_AT_LAB'}}¶

patient¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

consultation¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

sample_type¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

sample_type_other¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

has_sari¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

has_ari¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

doctor_name¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

diagnosis¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

diff_diagnosis¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

etiology_identified¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

is_atypical_presentation¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

atypical_presentation¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

is_unusual_course¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

icmr_category¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

icmr_label¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

status¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

result¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

fast_track¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

date_of_sample¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

date_of_result¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

testing_facility¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

created_by¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

last_edited_by¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

CSV_MAPPING = {'date_of_result': 'Date of Result', 'date_of_sample': 'Date of Sample', 'patient__age': 'Patient Age', 'patient__name': 'Patient Name', 'patient__phone_number': 'Patient Phone Number', 'result': 'Result', 'sample_type': 'Type', 'sample_type_other': 'Other Type', 'status': 'Status', 'testing_facility__name': 'Testing Facility'}¶

CSV_ANNOTATE_FIELDS = {'patient__age': PatientAgeFunc(Value('year'), Func(CASE WHEN <Q: (AND: ('patient__death_datetime__isnull', True))> THEN Now(), ELSE F(patient__death_datetime__date), Coalesce(F(patient__date_of_birth), Func(F(patient__year_of_birth), Value(1), Value(1), function=MAKE_DATE)), function=age))}¶

CSV_MAKE_PRETTY = {'result': <function PatientSample.<lambda>>, 'sample_type': <function PatientSample.<lambda>>, 'status': <function PatientSample.<lambda>>}¶

save(*args, **kwargs) → None¶

property flow¶

static has_write_permission(request)¶

static has_read_permission(request)¶

static has_update_permission(request)¶

has_object_read_permission(request)¶

has_object_update_permission(request)¶

has_object_destroy_permission(request)¶

exception DoesNotExist¶: Bases: ObjectDoesNotExist

exception MultipleObjectsReturned¶: Bases: MultipleObjectsReturned

consultation_id¶

created_by_id¶

created_date¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

deleted¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

external_id¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

get_icmr_category_display(*, field=<django.db.models.fields.IntegerField: icmr_category>)¶

get_result_display(*, field=<django.db.models.fields.IntegerField: result>)¶

get_sample_type_display(*, field=<django.db.models.fields.IntegerField: sample_type>)¶

get_status_display(*, field=<django.db.models.fields.IntegerField: status>)¶

id¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

last_edited_by_id¶

modified_date¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

patient_id¶

patientsampleflow_set¶

Accessor to the related objects manager on the reverse side of a many-to-one relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Parent.children is a ReverseManyToOneDescriptor instance.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

testing_facility_id¶

class PatientSampleFlow(id, external_id, created_date, modified_date, deleted, patient_sample, status, notes, created_by)¶

Bases: FacilityBaseModel

patient_sample¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

status¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

notes¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_by¶

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

exception DoesNotExist¶: Bases: ObjectDoesNotExist

exception MultipleObjectsReturned¶: Bases: MultipleObjectsReturned

created_by_id¶

created_date¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

deleted¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

external_id¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

get_status_display(*, field=<django.db.models.fields.IntegerField: status>)¶

id¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

modified_date¶: A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

patient_sample_id¶